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Modfeel<p>📢 Chapter 2 of <a href="https://mastodon.social/tags/Modfeel" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Modfeel</span></a> now online! 🎉 </p><p>👉 2. Modeling <a href="https://modfeelblog.wordpress.com" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">modfeelblog.wordpress.com</span><span class="invisible"></span></a></p><p>About <a href="https://mastodon.social/tags/models" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>models</span></a>, <a href="https://mastodon.social/tags/simulations" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>simulations</span></a> and <a href="https://mastodon.social/tags/predictions" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>predictions</span></a>. How organisms create <a href="https://mastodon.social/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> models of their environment and use them for simulations and predictions. And the <a href="https://mastodon.social/tags/limits" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>limits</span></a> of <a href="https://mastodon.social/tags/modeling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>modeling</span></a>. </p><p><a href="https://mastodon.social/tags/NeuronalNetworks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuronalNetworks</span></a> <a href="https://mastodon.social/tags/Cognition" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Cognition</span></a> <a href="https://mastodon.social/tags/Evolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Evolution</span></a> <a href="https://mastodon.social/tags/Biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Biology</span></a> <a href="https://mastodon.social/tags/Psychology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Psychology</span></a> <a href="https://mastodon.social/tags/Philosophy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Philosophy</span></a></p>
Rupert Overall<p>A really nice review just out on the epigenetic bases of brain ageing and how modulating epigenetics may hold therapeutic potential for treating age-related disorders.</p><p><a href="https://doi.org/10.1038/s44318-024-00148-8" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1038/s44318-024-001</span><span class="invisible">48-8</span></a></p><p><a href="https://fosstodon.org/tags/epigenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>epigenetics</span></a> <a href="https://fosstodon.org/tags/aging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>aging</span></a> <a href="https://fosstodon.org/tags/ageing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ageing</span></a> <a href="https://fosstodon.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> <a href="https://fosstodon.org/tags/brain" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>brain</span></a></p>
Fabrizio Musacchio<p>Due to its computational efficiency and biological plausibility, the <a href="https://sigmoid.social/tags/IzhikevichModel" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>IzhikevichModel</span></a> is an exceptional tool for understanding <a href="https://sigmoid.social/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> interactions within <a href="https://sigmoid.social/tags/SpikingNeuralNetworks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SpikingNeuralNetworks</span></a> (<a href="https://sigmoid.social/tags/SNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SNN</span></a>). Here’s a quick <a href="https://sigmoid.social/tags/Python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Python</span></a> implementation of Izhikevich's original <a href="https://sigmoid.social/tags/Matlab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Matlab</span></a> code along with examples using different synaptic weights and neuron types, each leading to diverse spiking behaviors and network dynamics:</p><p>🌍<a href="https://www.fabriziomusacchio.com/posts/izhikevich_network_model/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">fabriziomusacchio.com/posts/iz</span><span class="invisible">hikevich_network_model/</span></a> </p><p><a href="https://sigmoid.social/tags/CompNeuro" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompNeuro</span></a> <a href="https://sigmoid.social/tags/Neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Neuroscience</span></a> <a href="https://sigmoid.social/tags/ComputationalScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ComputationalScience</span></a> <a href="https://sigmoid.social/tags/NeuralNetworks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuralNetworks</span></a> <a href="https://sigmoid.social/tags/modeling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>modeling</span></a></p>
eLife<p>Researchers uncover the <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> circuits that let fruit fly larvae control their speed and think this mechanism could help us understand <a href="https://fediscience.org/tags/locomotion" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>locomotion</span></a> in other limbed species. <a href="https://fediscience.org/tags/neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroscience</span></a> <a href="https://fediscience.org/tags/drosophila" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>drosophila</span></a> <a href="https://elifesciences.org/articles/83328?utm_source=twitter&amp;utm_medium=social&amp;utm_campaign=organic" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">elifesciences.org/articles/833</span><span class="invisible">28?utm_source=twitter&amp;utm_medium=social&amp;utm_campaign=organic</span></a></p>
The EMBO Journal<p>ER stress induces <a href="https://sciencemastodon.com/tags/caspase" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>caspase</span></a>-2-tBID-GSDME-dependent cell death in neurons lytically infected with <a href="https://sciencemastodon.com/tags/herpes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>herpes</span></a> simplex <a href="https://sciencemastodon.com/tags/virus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>virus</span></a> type 2</p><p><a href="https://sciencemastodon.com/tags/HSV" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>HSV</span></a> type 2 infection promotes <a href="https://sciencemastodon.com/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> <a href="https://sciencemastodon.com/tags/celldeath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>celldeath</span></a> and <a href="https://sciencemastodon.com/tags/inflammatory" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>inflammatory</span></a> responses via <a href="https://sciencemastodon.com/tags/ERstress" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ERstress</span></a>-dependent <a href="https://sciencemastodon.com/tags/gasdermin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gasdermin</span></a> E activation.</p><p>Søren Paludan and colleagues</p><p><a href="https://www.embopress.org/doi/full/10.15252/embj.2022113118" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">embopress.org/doi/full/10.1525</span><span class="invisible">2/embj.2022113118</span></a></p>
PLOS Biology<p>Regulating firing rate. Populations of respiratory <a href="https://fediscience.org/tags/motoneurons" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>motoneurons</span></a> use combinations of 2 activity regulators (Na+ pumps &amp; Kv7 channels) that monitor different readouts of firing rate to maintain <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> output @PellizzariSarah @santin_joe &amp;co <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3Db8oX4" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3Db8oX4</span><span class="invisible"></span></a></p>
PLOS Biology<p>Regulating firing rate. Populations of respiratory <a href="https://fediscience.org/tags/motoneurons" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>motoneurons</span></a> use combinations of 2 activity regulators (Na+ pumps &amp; Kv7 channels) that monitor different readouts of firing rate to maintain <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> output @PellizzariSarah @santin_joe &amp;co <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3Db8oX4" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3Db8oX4</span><span class="invisible"></span></a></p>
PLOS Biology<p>Regulating firing rate. Populations of respiratory <a href="https://fediscience.org/tags/motoneurons" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>motoneurons</span></a> use combinations of 2 activity regulators (Na+ pumps &amp; Kv7 channels) that monitor different readouts of firing rate to maintain <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> output @PellizzariSarah @santin_joe &amp;co <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3Db8oX4" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3Db8oX4</span><span class="invisible"></span></a></p>
PLOS Biology<p><a href="https://fediscience.org/tags/Astrocytes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Astrocytes</span></a> mostly seem to *boost* neuronal activity, but @elena_dossi @NathalieRouach &amp;co reveal that activity-dependent activation of astroglial <a href="https://fediscience.org/tags/pannexin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pannexin</span></a> 1 channels *inhibits* hippocampal <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> networks - a novel negative feedback loop <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3h65tXQ" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3h65tXQ</span><span class="invisible"></span></a></p>
PLOS Biology<p><a href="https://fediscience.org/tags/Astrocytes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Astrocytes</span></a> mostly seem to *boost* neuronal activity, but @elena_dossi @NathalieRouach &amp;co reveal that activity-dependent activation of astroglial <a href="https://fediscience.org/tags/pannexin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pannexin</span></a> 1 channels *inhibits* hippocampal <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> networks - a novel negative feedback loop <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3h65tXQ" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3h65tXQ</span><span class="invisible"></span></a></p>
PLOS Biology<p><a href="https://fediscience.org/tags/Astrocytes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Astrocytes</span></a> mostly seem to *boost* neuronal activity, but @elena_dossi @NathalieRouach &amp;co reveal that activity-dependent activation of astroglial <a href="https://fediscience.org/tags/pannexin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pannexin</span></a> 1 channels *inhibits* hippocampal <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> networks - a novel negative feedback loop <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3h65tXQ" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3h65tXQ</span><span class="invisible"></span></a></p>
PLOS Biology<p>Microtubules are key to <a href="https://fediscience.org/tags/axon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>axon</span></a>-<a href="https://fediscience.org/tags/dendrite" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dendrite</span></a> polarity, but what determines their correct orientation? @MartinHarterink &amp;co show that local <a href="https://fediscience.org/tags/microtubule" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microtubule</span></a> nucleation &amp; stabilization are important for <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> polarity establishment in <a href="https://fediscience.org/tags/Celegans" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Celegans</span></a> <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3EECHX3" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3EECHX3</span><span class="invisible"></span></a></p>
PLOS Biology<p>Microtubules are key to <a href="https://fediscience.org/tags/axon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>axon</span></a>-<a href="https://fediscience.org/tags/dendrite" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dendrite</span></a> polarity, but what determines their correct orientation? @MartinHarterink &amp;co show that local <a href="https://fediscience.org/tags/microtubule" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microtubule</span></a> nucleation &amp; stabilization are important for <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> polarity establishment in <a href="https://fediscience.org/tags/Celegans" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Celegans</span></a> <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3EECHX3" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3EECHX3</span><span class="invisible"></span></a></p>
PLOS Biology<p>Microtubules are key to <a href="https://fediscience.org/tags/axon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>axon</span></a>-<a href="https://fediscience.org/tags/dendrite" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dendrite</span></a> polarity, but what determines their correct orientation? @MartinHarterink &amp;co show that local <a href="https://fediscience.org/tags/microtubule" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microtubule</span></a> nucleation &amp; stabilization are important for <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> polarity establishment in <a href="https://fediscience.org/tags/Celegans" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Celegans</span></a> <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PLOSBiology</span></a> <a href="https://plos.io/3EECHX3" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">plos.io/3EECHX3</span><span class="invisible"></span></a></p>
Lou Zonca<p><a href="https://fediscience.org/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a></p><p>Hi everyone ! I am an applied mathematician working in <a href="https://fediscience.org/tags/neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroscience</span></a>! <br>I recently started a postdoc @UniversityPompeuFabra in Barcelona to study disorders of <a href="https://fediscience.org/tags/consciouness" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>consciouness</span></a> (i.e. patients waking up from <a href="https://fediscience.org/tags/coma" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>coma</span></a> but not fully recovering) using whole-brain models. </p><p>I am also interested in neuron-glia interactions and in particular in the role of <a href="https://fediscience.org/tags/astrocytes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>astrocytes</span></a> in the regulation <a href="https://fediscience.org/tags/neuronal" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuronal</span></a> activity such as <a href="https://fediscience.org/tags/bursting" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bursting</span></a> and <a href="https://fediscience.org/tags/oscillatory" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>oscillatory</span></a> patterns generation.</p>